Items where NERC Author is "Hoffman, Joseph I."

2024

Nagel, Rebecca; Pohle, Katja; Jordán, Lilla; Tuponja, Iva; Stainfield, Claire; Toscani, Camille; Fox-Clarke, Cameron; Costantini, David; Czirják, Gábor Á.; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2024 Life-history stage influences immune investment and oxidative stress in response to environmental heterogeneity in Antarctic fur seals. Communications Biology, 7 (1), 788. 13, pp. https://doi.org/10.1038/s42003-024-06499-6

Hench, Kosmas; Vendrami, David L.J.; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2024 Refinement of the Antarctic fur seal (Arctocephalus gazella) reference genome increases continuity and completeness. G3 Genes|Genomes|Genetics, 14 (11), jkae179. 12, pp. https://doi.org/10.1093/g3journal/jkae179

Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Vendrami, David L.J.; Hench, Kosmas; Chen, Rebecca S.; Stoffel, Martin A.; Kardos, Marty; Amos, William; Kalinowski, Joern; Rickert, Daniel; Koehrer, Karl. 2024 Genomic and fitness consequences of a near-extinction event in the northern elephant seal. Nature Ecology & Evolution. 33, pp. https://doi.org/10.1038/s41559-024-02533-2

Pereira, Hugo; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Krüger, Oliver; Czirják, Gábor Á.; Rinaud, Tony; Ottensmann, Meinolf; Gladow, Kai-Philipp; Caspers, Barbara A.; Maraci, Öncü; Kaiser, Sylvia; Chakarov, Nayden. 2024 The gut microbiota-immune-brain axis in a wild vertebrate: dynamic interactions and health impacts. Frontiers in Microbiology, 15, 1413976. 16, pp. https://doi.org/10.3389/fmicb.2024.1413976

Mattmüller, Ramona M.; Thomisch, Karolin; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Van Opzeeland, Ilse. 2024 Characterizing offshore polar ocean soundscapes using ecoacoustic intensity and diversity metrics. Royal Society Open Science, 11 (8), 231917. 22, pp. https://doi.org/10.1098/rsos.231917

Brejon Lamartinière, Etienne; Tremble, Keaton; Dentinger, Bryn T. M.; Dasmahapatra, Kanchon K.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2024 Runs of homozygosity reveal contrasting histories of inbreeding across global lineages of the edible porcini mushroom, Boletus edulis. Molecular Ecology, 33 (16), e17470. 13, pp. https://doi.org/10.1111/mec.17470

Tebbe, J.; Havenstein, K.; Forcada, J. ORCID: https://orcid.org/0000-0002-2115-0150; Tiedemann, R.; Caspers, B.; Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949. 2024 No evidence for a role of MHC class II genotype in the chemical encoding of heterozygosity and relatedness in Antarctic fur seals. Proceedings of the Royal Society of London, B, 291 (2019), 20232519. 11, pp. https://doi.org/10.1098/rspb.2023.2519

2023

Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Gimenez, Olivier; Staniland, Iain J.; Bucktrout, Pete; Wood, Andrew G.. 2023 Ninety years of change, from commercial extinction to recovery, range expansion and decline for Antarctic fur seals at South Georgia. Global Change Biology, 29 (24). 6867-6887. https://doi.org/10.1111/gcb.16947

Janke, Axel; Bender, Arona N.; Krause, Douglas J.; Goebel, Michael E.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Lewallen, Eric A.; Bonin, Carolina A.. 2023 Genetic diversity and demographic history of the leopard seal: A Southern Ocean top predator. PLOS ONE, 18 (8), e0284640. 16, pp. https://doi.org/10.1371/journal.pone.0284640

Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949; Heesch, S.; Clark, M.S. ORCID: https://orcid.org/0000-0002-3442-3824. 2023 Editorial: Polar genomics in a changing world [in special issue: Polar Genomics] Genes, 14 (7), 1395. 5, pp. https://doi.org/10.3390/genes14071395

Lawson, Michael R. M.; Hayle, Michael G. B.; Shechonge, Asilatu H.; Nyingi, Wanja Dorothy; Ford, Antonia G.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Day, Julia J.; Turner, George F.; Dasmahapatra, Kanchon K.. 2023 Sympatric and allopatric Alcolapia soda lake cichlid species show similar levels of assortative mating. Frontiers in Ecology and Evolution, 11, 1150083. 13, pp. https://doi.org/10.3389/fevo.2023.1150083

Toro-Valdivieso, Constanza; Jugdaohsingh, Ravin; Powell, Jonathan J.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Moore, Charles; Blacklaws, Barbara. 2023 Heavy metal contamination in pristine environments: lessons from the Juan Fernandez fur seal (Arctocephalus philippii philippii). Royal Society Open Science, 10 (3), 221237. 18, pp. https://doi.org/10.1098/rsos.221237

Bergeron, Lucie A.; Besenbacher, Søren; Zheng, Jiao; Li, Panyi; Bertelsen, Mads Frost; Quintard, Benoit; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Li, Zhipeng; St. Leger, Judy; Shao, Changwei; Stiller, Josefin; Gilbert, M. Thomas P.; Schierup, Mikkel H.; Zhang, Guojie. 2023 Evolution of the germline mutation rate across vertebrates. Nature, 615. 285-291. https://doi.org/10.1038/s41586-023-05752-y

Chen, Rebecca S.; Soulsbury, Carl D.; Lebigre, Christophe; Ludwig, Gilbert; van Oers, Kees; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2023 Effects of hunting on genetic diversity, inbreeding and dispersal in Finnish black grouse (Lyrurus tetrix). Evolutionary Applications, 16 (3). 625-637. https://doi.org/10.1111/eva.13521

2022

Vendrami, David L.J.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Wilding, Craig S.. 2022 Heterogeneous Genomic Divergence Landscape in Two Commercially Important European Scallop Species [in special issue: Genomics in Aquaculture and Fisheries] Genes, 14 (1), 14. 18, pp. https://doi.org/10.3390/genes14010014

Nagel, Rebecca; Coleman, Jamie ORCID: https://orcid.org/0000-0002-0162-8356; Stainfield, Claire; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2022 Observations of Giant Petrels (Macronectes sp.) Attacking and Killing Antarctic Fur Seal (Arctocephalus gazella) Pups. Aquatic Mammals, 48 (6). 509-512. https://doi.org/10.1578/AM.48.6.2022.509

Tebbe, J.; Ottensmann, M.; Havenstein, K.; Efstratiou, A.; Lenz, T.L.; Caspers, B.A.; Forcada, J. ORCID: https://orcid.org/0000-0002-2115-0150; Tiedemann, R.; Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949. 2022 Intronic primers reveal unexpectedly high major histocompatibility complex diversity in Antarctic fur seals. Scientific Reports, 12, 17933. 14, pp. https://doi.org/10.1038/s41598-022-21658-7

Vendrami, David L J; Gossmann, Toni I.; Chakarov, Nayden; Paijmans, Anneke J; Eyre-Walker, Adam; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Betancourt, Andrea. 2022 Signatures of selection on mitonuclear integrated genes uncover hidden mitogenomic variation in fur seals. Genome Biology and Evolution, 14 (7), evac104. 12, pp. https://doi.org/10.1093/gbe/evac104

Klimova, Anastasia; Gutiérrez-Rivera, Jesus Neftalí; Sánchez-Sotomayor, Victor; Hoffman, Joseph Ivan ORCID: https://orcid.org/0000-0001-5895-8949. 2022 The genetic consequences of captive breeding, environmental change and human exploitation in the endangered peninsular pronghorn. Scientific Reports, 12 (1), 11253. 12, pp. https://doi.org/10.1038/s41598-022-14468-4

Nagel, Rebecca; Kaiser, Sylvia; Stainfield, Claire; Toscani, Camille; Fox-Clarke, Cameron; Paijmans, Anneke J.; Costa Castro, Camila; Vendrami, David L. J.; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2022 Low heritability and high phenotypic plasticity of salivary cortisol in response to environmental heterogeneity in a wild pinniped. Ecology and Evolution, 12 (3), e8757. 13, pp. https://doi.org/10.1002/ece3.8757

Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Chen, Rebecca S.; Vendrami, David L.J.; Paijmans, Anna J.; Dasmahapatra, Kanchon K.; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150. 2022 Demographic reconstruction of Antarctic fur seals supports the krill surplus hypothesis. Genes, 13 (3). 541. https://doi.org/10.3390/genes13030541

Liu, Xiaodong; Schjøtt, Suzanne Rønhøj; Granquist, Sandra M.; Rosing‐Asvid, Aqqalu; Dietz, Rune; Teilmann, Jonas; Galatius, Anders; Cammen, Kristina; O'Corry‐Crowe, Greg; Harding, Karin; Härkönen, Tero; Hall, Ailsa; Carroll, Emma L.; Kobayashi, Yumi; Hammill, Mike; Stenson, Garry; Frie, Anne Kirstine; Lydersen, Christian; Kovacs, Kit M.; Andersen, Liselotte W.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Goodman, Simon J.; Vieira, Filipe G.; Heller, Rasmus; Moltke, Ida; Tange Olsen, Morten. 2022 Origin and expansion of the world’s most widespread pinniped: Range‐wide population genomics of the harbour seal (Phoca vitulina). Molecular Ecology, 31 (6). 1682-1699. https://doi.org/10.1111/mec.16365

2021

Peart, Claire R.; Williams, Christina; Pophaly, Saurabh D.; Neely, Benjamin A.; Gulland, Frances M.D.; Adams, David J.; Ng, Bee Ling; Cheng, William; Goebel, Michael E.; Fedrigo, Olivier; Haase, Bettina; Mountcastle, Jacquelyn; Fungtammasan, Arkarachai; Formenti, Giulio; Collins, Joanna; Wood, Jonathan; Sims, Ying; Torrance, James; Tracey, Alan; Howe, Kerstin; Rhie, Arang; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Johnson, Jeremy; Jarvis, Erich D.; Breen, Matthew; Wolf, Jochen B.W.. 2021 Hi‐C scaffolded short‐ and long‐read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. Molecular Ecology Resources, 21 (7). 2455-2470. https://doi.org/10.1111/1755-0998.13443

Khera, Monil; Arbuckle, Kevin; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Sanderson, Jennifer L.; Cant, Michael A.; Nichols, Hazel J.. 2021 Cooperatively breeding banded mongooses do not avoid inbreeding through familiarity-based kin recognition. Behavioral Ecology and Sociobiology, 75 (9), 135. 17, pp. https://doi.org/10.1007/s00265-021-03076-3

Vendrami, David L.J.; Peck, Lloyd S. ORCID: https://orcid.org/0000-0003-3479-6791; Clark, Melody S. ORCID: https://orcid.org/0000-0002-3442-3824; Eldon, Bjarki; Meredith, Michael ORCID: https://orcid.org/0000-0002-7342-7756; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2021 Sweepstake reproductive success and collective dispersal produce chaotic genetic patchiness in a broadcast spawner. Science Advances, 7 (37). 12, pp. https://doi.org/10.1126/sciadv.abj4713

Michalek, Kati; Vendrami, David L.J.; Bekaert, Michaël; Green, David H.; Last, Kim S.; Telesca, Luca ORCID: https://orcid.org/0000-0002-9060-2261; Wilding, Thomas A.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2021 Mytilus trossulus introgression and consequences for shell traits in longline cultivated mussels. Evolutionary Applications, 14 (7). 1830-1843. https://doi.org/10.1111/eva.13245

Nagel, Rebecca; Mews, Sina; Adam, Timo; Stainfield, Claire; Fox-Clarke, Cameron; Toscani, Camille; Langrock, Roland; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2021 Movement patterns and activity levels are shaped by the neonatal environment in Antarctic fur seal pups. Scientific Reports, 11. 12, pp. https://doi.org/10.1038/s41598-021-93253-1

Marshall, H.H.; Johnstone, R.A.; Thompson, F.J.; Nichols, H.J.; Wells, D.; Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949; Kalema-Zikusoka, G.; Sanderson, J.L.; Vitikainen, E.I.K.; Blount, J.D.; Cant, M.A.. 2021 A veil of ignorance can promote fairness in a mammal society. Nature Communications, 12, 3717. 8, pp. https://doi.org/10.1038/s41467-021-23910-6

Nagel, R.; Stainfield, C.; Fox-Clarke, C.; Toscani, C.; Forcada, J. ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949. 2021 Evidence for an Allee effect in a declining fur seal population. Proceedings of the Royal Society B: Biological Sciences, 288 (1947). 20202882. https://doi.org/10.1098/rspb.2020.2882

Wells, D.A.; Cant, M.A.; Thompson, F.J.; Marshall, H.H.; Vitikainen, E.I.K.; Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949; Nichols, H.J.. 2021 Extra-group paternity varies with proxies of relatedness in a social mammal with high inbreeding risk. Behavioral Ecology, 32 (1). 94-104. https://doi.org/10.1093/beheco/araa105

2020

Tebbe, Jonas; Humble, Emily; Stoffel, Martin Adam; Tewes, Lisa Johanna; Müller, Caroline; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Caspers, Barbara; Hoffman, Joseph Ivan ORCID: https://orcid.org/0000-0001-5895-8949. 2020 Chemical patterns of colony membership and mother-offspring similarity in Antarctic fur seals are reproducible. PeerJ, 8, 10131. 20, pp. https://doi.org/10.7717/peerj.10131

Wells, David A.; Cant, Michael A.; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949; Nichols, Hazel J.; Baalen, Minus. 2020 Inbreeding depresses altruism in a cooperative society. Ecology Letters, 23 (10). 1460-1467. https://doi.org/10.1111/ele.13578

Vendrami, David L.J.; De Noia, Michele; Telesca, Luca ORCID: https://orcid.org/0000-0002-9060-2261; Brodte, Eva-Maria; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2020 Genome-wide insights into introgression and its consequences for genome-wide heterozygosity in the Mytilus species complex across Europe. Evolutionary Applications, 13 (8). 63-76. https://doi.org/10.1111/eva.12974

Humble, Emily; Paijmans, Anneke J.; Forcada, Jaume ORCID: https://orcid.org/0000-0002-2115-0150; Hoffman, Joseph I. ORCID: https://orcid.org/0000-0001-5895-8949. 2020 An 85K SNP array uncovers inbreeding and cryptic relatedness in an Antarctic fur seal breeding colony. G3L Genes, Genomes, Genetics, 10 (8). 2787-2799. https://doi.org/10.1534/g3.120.401268

Hoffman, J.I. ORCID: https://orcid.org/0000-0001-5895-8949; Nagel, R.; Litzke, V.; Wells, D.A.; Amos, W.. 2020 Genetic analysis of Boletus edulis suggests that intra-specific competition may reduce local genetic diversity as a woodland ages. Royal Society Open Science, 7 (7), 200419. https://doi.org/10.1098/rsos.200419