Items where NERC Author is "Bailey, Mark"

Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Gweon, H. Soon ORCID: https://orcid.org/0000-0002-6218-6301; Bowes, Michael J. ORCID: https://orcid.org/0000-0002-0673-1934; Anjum, Muna F.; Crook, Derrick W.; Chau, Kevin K.; Shaw, Liam P.; Hubbard, Alasdair; AbuOun, Manal; Tipper, Holly J. ORCID: https://orcid.org/0000-0002-1857-9204; Hoosdally, Sarah J.; Bailey, Mark J.; Walker, A. Sarah; Stoesser, Nicole. 2024 Dissemination and persistence of antimicrobial resistance (AMR) along the wastewater-river continuum. Water Research, 264, 122204. 12, pp. 10.1016/j.watres.2024.122204

Kowalchuk, George A.; Bailey, Mark J.. 2023 Celebrating 15 years of The ISME Journal. The ISME Journal, 17 (7). 950-951. 10.1038/s41396-023-01413-0

Matlock, William; Chau, Kevin K.; AbuOun, Manal; Stubberfield, Emma; Barker, Leanne; Kavanagh, James; Pickford, Hayleah; Gilson, Daniel; Smith, Richard P.; Gweon, H. Soon ORCID: https://orcid.org/0000-0002-6218-6301; Hoosdally, Sarah J.; Swann, Jeremy; Sebra, Robert; Bailey, Mark J.; Peto, Timothy E.A.; Crook, Derrick W.; Anjum, Muna F.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Walker, A. Sarah; Stoesser, Nicole; Shaw, Liam P.; REHAB consortium. 2021 Genomic network analysis of environmental and livestock F-type plasmid populations. ISME Journal, 15. 2322-2335. 10.1038/s41396-021-00926-w

Shaw, Liam P.; Chau, Kevin K.; Kavanagh, James; AbuOun, Manal; Stubberfield, Emma; Gweon, H. Soon ORCID: https://orcid.org/0000-0002-6218-6301; Barker, Leanne; Rodger, Gillian; Bowes, Mike J. ORCID: https://orcid.org/0000-0002-0673-1934; Hubbard, Alasdair T.M.; Pickford, Hayleah; Swann, Jeremy; Gilson, Daniel; Smith, Richard P.; Hoosdally, Sarah J.; Sebra, Robert; Brett, Howard; Peto, Tim E.A.; Bailey, Mark J.; Crook, Derrick W.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Anjum, Muna F.; Walker, A. Sarah; Stoesser, Nicole. 2021 Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae. Science Advances, 7 (15), eabe3868. 11, pp. 10.1126/sciadv.abe3868

Gweon, Hyun S. ORCID: https://orcid.org/0000-0002-6218-6301; Bowes, Michael J. ORCID: https://orcid.org/0000-0002-0673-1934; Moorhouse, Heather L.; Oliver, Anna E.; Bailey, Mark J.; Acreman, Michael C.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154. 2021 Contrasting community assembly processes structure lotic bacteria metacommunities along the river continuum. Environmental Microbiology, 23 (1). 484-498. 10.1111/1462-2920.15337

Gweon, H. Soon ORCID: https://orcid.org/0000-0002-6218-6301; Shaw, Liam P.; Swann, Jeremy; De Maio, Nicola; AbuOun, Manal; Niehus, Rene; Hubbard, Alasdair T.M.; Bowes, Mike J. ORCID: https://orcid.org/0000-0002-0673-1934; Bailey, Mark J.; Peto, Tim E.A.; Hoosdally, Sarah J.; Walker, A. Sarah; Sebra, Robert P.; Crook, Derrick W.; Anjum, Muna F.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Stoesser, Nicole. 2019 The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples. Environmental Microbiome, 14, 7. 15, pp. 10.1186/s40793-019-0347-1

De Maio, Nicola; Shaw, Liam P.; Hubbard, Alasdair; George, Sophie; Sanderson, Nicholas D.; Swann, Jeremy; Wick, Ryan; AbuOun, Manal; Stubberfield, Emma; Hoosdally, Sarah J.; Crook, Derrick W.; Peto, Timothy E.A.; Sheppard, Anna E.; Bailey, Mark J.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Anjum, Muna F.; Walker, A. Sarah; Stoesser, Nicole. 2019 Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. Microbial Genomics, 5 (9), 000294. 12, pp. 10.1099/mgen.0.000294

Lu, Yonglong; Zhang, Yueqing; Cao, Xianghui; Wang, Chenchen; Wang, Yichao; Zhang, Meng; Ferrier, Robert C.; Jenkins, Alan; Yuan, Jingjing; Bailey, Mark J.; Chen, Deliang; Tian, Hanqin; Li, Hong; von Weizsäcker, Ernst Ulrich; Zhang, Zhongxiang. 2019 Forty years of reform and opening up: China’s progress toward a sustainable path. Science Advances, 5 (8), eaau9413. 10, pp. 10.1126/sciadv.aau9413

Plassart, Pierre; Prévost-Bouré, Nicolas Chemidlin; Uroz, Stéphane; Dequiedt, Samuel; Stone, Dorothy; Creamer, Rachel; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, Mark J.; Ranjard, Lionel; Lemanceau, Philippe. 2019 Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect. Scientific Reports, 9, 605. 17, pp. 10.1038/s41598-018-36867-2

de Vries, Franciska T.; Griffiths, Rob I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, Mark; Craig, Hayley; Girlanda, Mariangela; Gweon, Hyun Soon ORCID: https://orcid.org/0000-0002-6218-6301; Hallin, Sara; Kaisermann, Aurore; Keith, Aidan M. ORCID: https://orcid.org/0000-0001-9619-1320; Kretzschmar, Marina; Lemanceau, Philippe; Lumini, Erica; Mason, Kelly E. ORCID: https://orcid.org/0000-0003-3426-3178; Oliver, Anna; Ostle, Nick; Prosser, James I.; Thion, Cecile; Thomson, Bruce; Bardgett, Richard D.. 2018 Soil bacterial networks are less stable under drought than fungal networks. Nature Communications, 9, 3033. 12, pp. 10.1038/s41467-018-05516-7

Gu, Shuzhong; Jenkins, Alan; Gao, Shi-Ji; Lu, Yonglong; Li, Hong; Li, Yuanyuan; Ferrier, Robert C.; Bailey, Mark; Wang, Yiwen; Zhang, Yuan; Qi, Xuebin; Yu, Lili; Ding, Liuqian; Daniell, Tim; Williams, Richard; Hannaford, Jamie ORCID: https://orcid.org/0000-0002-5256-3310; Acreman, Mike; Kirk, Stuart; Liu, Hongxian; Liu, Zhengtao; Luo, Liangguo; Yan, Denghua; Liu, Xuejun; Yu, Fang; Wang, Dong; Zhang, Bing; Ding, Aizhong; Xie, Xiangrong; Liu, Jing; Ma, Chao; Jobson, Anita. 2017 Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science & Policy, 75. 65-69. 10.1016/j.envsci.2017.05.008

Malik, Ashish A.; Thomson, Bruce C.; Whiteley, Andrew S.; Bailey, Mark; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547. 2017 Bacterial physiological adaptations to contrasting edaphic conditions identified using landscape scale metagenomics. mBio, 8 (4), e00799-17. 13, pp. 10.1128/mBio.00799-17

Gweon, Hyun S. ORCID: https://orcid.org/0000-0002-6218-6301; Bailey, Mark J.; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154. 2017 Assessment of the bimodality in the distribution of bacterial genome sizes. ISME Journal, 11 (3). 821-824. 10.1038/ismej.2016.142

Morriën, Elly; Hannula, S. Emilia; Snoek, L. Basten; Helmsing, Nico R.; Zweers, Hans; de Hollander, Mattias; Soto, Raquel Luján; Bouffaud, Marie-Lara; Buée, Marc; Dimmers, Wim; Duyts, Henk; Geisen, Stefan; Girlanda, Mariangela; Griffiths, Rob I. ORCID: https://orcid.org/0000-0002-3341-4547; Jørgensen, Helene-Bracht; Jensen, John; Plassart, Pierre; Redecker, Dirk; Schmelz, Rűdiger M; Schmidt, Olaf; Thomson, Bruce C.; Tisserant, Emilie; Uroz, Stephane; Winding, Anne; Bailey, Mark J.; Bonkowski, Michael; Faber, Jack H.; Martin, Francis; Lemanceau, Philippe; de Boer, Wietse; van Veen, Johannes A.; van der Putten, Wim H.. 2017 Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, 14349. 10, pp. 10.1038/ncomms14349

Griffiths, B.S.; Rombke, J.; Schmelz, R.M.; Scheffczyk, A.; Faber, J.H.; Bloem, J.; Peres, G.; Cluzeau, D.; Chabbi, A.; Suhadolc, M.; Sousa, J.P.; Martins da Silva, P.; Carvahlo, F.; Mendes, S.; Morais, P.; Francisco, R.; Pereira, C.; Bonkowksi, M.; Geisen, S.; Bardgett, R.D.; de Vries, F.T.; Bolger, T.; Dirilgen, T.; Schmidt, O.; Winding, A.; Hendriksen, N.B.; Johansen, A.; Philippot, L.; Plassart, P.; Bru, D.; Thomson, B.; Griffiths, R.I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, M.J.; Keith, A. ORCID: https://orcid.org/0000-0001-9619-1320; Rutgers, M.; Mulder, C.; Hannula, S.E.; Creamer, R.; Stone, D.. 2016 Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function. Ecological Indicators, 69. 213-223. 10.1016/j.ecolind.2016.04.023

Nesme, Joseph; Achouak, Wafa; Agathos, Spiros N.; Bailey, Mark; Baldrian, Petr; Brunel, Dominique; Frostegård, Åsa; Heulin, Thierry; Jansson, Janet K.; Jurkevitch, Edouard; Kruus, Kristiina L.; Kowalchuk, George A.; Lagares, Antonio; Lappin-Scott, Hilary M.; Lemanceau, Philippe; Le Paslier, Denis; Mandic-Mulec, Ines; Murrell, J. Colin; Myrold, David D.; Nalin, Renaud; Nannipieri, Paolo; Neufeld, Josh D.; O'Gara, Fergal; Parnell, John J.; Pühler, Alfred; Pylro, Victor; Ramos, Juan L.; Roesch, Luiz F.W.; Schloter, Michael; Schleper, Christa; Sczyrba, Alexander; Sessitsch, Angela; Sjöling, Sara; Sørensen, Jan; Sørensen, Søren J.; Tebbe, Christoph C.; Topp, Edward; Tsiamis, George; van Elsas, Jan Dirk; van Keulen, Geertje; Widmer, Franco; Wagner, Michael; Zhang, Tong; Zhang, Xiaojun; Zhao, Liping; Zhu, Yong-Guan; Vogel, Timothy M.; Simonet, Pascal. 2016 Back to the future of soil metagenomics. Frontiers in Microbiology, 7, 73. 5, pp. 10.3389/fmicb.2016.00073

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Thomson, Bruce C.; Plassart, Pierre; Gweon, Hyun S. ORCID: https://orcid.org/0000-0002-6218-6301; Stone, Dorothy; Creamer, Rachael E.; Lemanceau, Philippe; Bailey, Mark J.. 2016 Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets [in special issue: Soil biodiversity and ecosystem functions across Europe: a transect covering variations in bio-geographical zones, land use and soil properties] Applied Soil Ecology, 97. 61-68. 10.1016/j.apsoil.2015.06.018

Thomson, Bruce C.; Tisserant, Emilie; Plassart, Pierre; Uroz, Stéphane; Griffiths, Rob I. ORCID: https://orcid.org/0000-0002-3341-4547; Hannula, S. Emilia; Buée, Marc; Mougel, Christophe; Ranjard, Lionel; Van Veen, Johannes A.; Martin, Francis; Bailey, Mark J.; Lemanceau, Philippe. 2015 Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biology and Biochemistry, 88. 403-413. 10.1016/j.soilbio.2015.06.012

Lu, Yonglong; Wang, Ruoshi; Zhang, Yueqing; Su, Hongqiao; Wang, Pei; Jenkins, Alan; Ferrier, Robert C.; Bailey, Mark; Squire, Geoff. 2015 Ecosystem health towards sustainability. Ecosystem Health and Sustainability, 1 (1), 2. 10.1890/EHS14-0013.1

Lu, Yonglong; Jenkins, Alan; Ferrier, Robert C.; Bailey, Mark; Gordon, Iain J; Song, Shuai; Huang, Jikun; Jia, Shaofeng; Zhang, Fusuo; Liu, Xuejun; Feng, Zhaozhong; Zhang, Zhibin. 2015 Addressing China's grand challenge of achieving food security while ensuring environmental sustainability. Science Advances, 1 (1), e1400039. 5, pp. 10.1126/sciadv.1400039

Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Gweon, Hyun S. ORCID: https://orcid.org/0000-0002-6218-6301; Bowes, Michael J. ORCID: https://orcid.org/0000-0002-0673-1934; Newbold, Lindsay K. ORCID: https://orcid.org/0000-0001-8895-1406; Field, Dawn; Bailey, Mark J.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547. 2015 Catchment-scale biogeography of riverine bacterioplankton. ISME Journal, 9 (2). 516-526. 10.1038/ismej.2014.166

Huntingford, Chris ORCID: https://orcid.org/0000-0002-5941-7770; Marsh, Terry; Scaife, Adam A.; Kendon, Elizabeth J.; Hannaford, Jamie ORCID: https://orcid.org/0000-0002-5256-3310; Kay, Alison L. ORCID: https://orcid.org/0000-0002-5526-1756; Lockwood, Mike; Prudhomme, Christel; Reynard, Nick S. ORCID: https://orcid.org/0000-0002-5185-3869; Parry, Simon ORCID: https://orcid.org/0000-0002-7057-4195; Lowe, Jason A.; Screen, James A.; Ward, Helen C.; Roberts, Malcolm; Stott, Peter A.; Bell, Vicky A. ORCID: https://orcid.org/0000-0002-0792-5650; Bailey, Mark; Jenkins, Alan; Legg, Tim; Otto, Friederike E.L.; Massey, Neil; Schaller, Nathalie; Slingo, Julia; Allen, Myles R.. 2014 Potential influences on the United Kingdom's floods of winter 2013/14. Nature Climate Change, 4 (9). 769-777. 10.1038/nclimate2314

Thomson, Bruce C.; Ostle, Nick J.; McNamara, Niall P. ORCID: https://orcid.org/0000-0002-5143-5819; Oakley, Simon ORCID: https://orcid.org/0000-0002-5757-7420; Whiteley, Andrew S.; Bailey, Mark J.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547. 2013 Plant soil interactions alter carbon cycling in an upland grassland soil. Frontiers in Microbiology, 4, 253. 12, pp. 10.3389/fmicb.2013.00253

Smart, S.M. ORCID: https://orcid.org/0000-0003-2750-7832; Henrys, P.A. ORCID: https://orcid.org/0000-0003-4758-1482; Purse, B.V. ORCID: https://orcid.org/0000-0001-5140-2710; Murphy, J.M.; Bailey, M.J.; Marrs, R.H.. 2012 Clarity or confusion?: problems in attributing large-scale ecological changes to anthropogenic drivers. Ecological Indicators, 20. 51-56. 10.1016/j.ecolind.2012.01.022

Thomson, Bruce; Bailey, Mark; Plassart, Pierre; Lemanceau, Philippe; Ranjard, Lionel; Griffiths, Rob ORCID: https://orcid.org/0000-0002-3341-4547. 2012 Effects of land use intensity on European soil bacterial, fungal and archaeal communities. [Lecture] In: Eurosoil 2012, Bari, Italy, 2-6 July 2012. (Unpublished)

Plassart, Pierre; Terrat, Sebastien; Thomson, Bruce; Griffiths, Robert ORCID: https://orcid.org/0000-0002-3341-4547; Dequiedt, Samuel; Lelievre, Melanie; Regnier, Tiffanie; Nowak, Virginie; Bailey, Mark; Lemanceau, Philippe; Bispo, Antonio; Chabbi, Abad; Maron, Pierre-Alain; Mougel, Christophe; Ranjard, Lionel. 2012 Evaluation of the ISO Standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure. PLoS ONE, 7 (9), e44279. 8, pp. 10.1371/journal.pone.0044279

Knight, Rob; Jansson, Janet; Field, Dawn; Fierer, Noah; Desai, Narayan; Fuhrman, Jed A.; Hugenholtz, Phil; van der Lelie, Daniel; Meyer, Folker; Stevens, Rick; Bailey, Mark J.; Gordon, Jeffrey I.; Kowalchuk, George A.; Gilbert, Jack A.. 2012 Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology, 30 (6). 513-520. 10.1038/nbt.2235

Thomson, Bruce; Ostle, Nick; Nicol, Graeme; Bailey, Mark; Griffiths, Robert ORCID: https://orcid.org/0000-0002-3341-4547. 2012 The effect of pH on soil microbial community structure and function: results from a manipulated pH experiment. [Poster] In: 14th International Symposium on Microbial Ecology (ISME14), Copenhagen, 19-24 Aug 2012. (Unpublished)

Norris, Ken; Bailey, Mark; Keith, Aidan ORCID: https://orcid.org/0000-0001-9619-1320; Maskell, Lindsay ORCID: https://orcid.org/0000-0003-4006-7755; Reading, Christopher; Turner, Sarah; Vanbergen, Adam ORCID: https://orcid.org/0000-0001-8320-5535; Watt, Allan, & others ORCID: https://orcid.org/0000-0002-9534-728X. 2011 Biodiversity in the context of ecosystem services [chapter 4]. In: UK National Ecosystem Assessment. Understanding nature's value to society. Technical Report. Cambridge, UNEP-WCMC, 63-104.

Gilbert, Jack A.; Meyer, Folker; Bailey, Mark J.. 2011 Commentary: The future of microbial metagenomics (or is ignorance bliss?). ISME Journal, 5 (5). 777-779. 10.1038/ismej.2010.178

Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn; Knight, Rob; Cole, James R.; Amaral-Zettler, Linda; Gilbert, Jack A.; Karsch-Mizrachi, Ilene; Johnston, Anjanette; Cochrane, Guy; Vaughan, Robert; Hunter, Christopher; Park, Joonhong; Morrison, Norman; Rocca-Serra, Philippe; Sterk, Peter; Arumugam, Manimozhiyan; Bailey, Mark; Baumgartner, Laura; Birren, Bruce W.; Blaser, Martin J.; Bonazzi, Vivien Bonazzi; Booth, Tim; Bork, Peer; Bushman, Frederic D.; Buttigieg, Pier Luigi; Chain, Patrick S.G.; Charlson, Emily; Costello, Elizabeth K.; Huot-Creasy, Heather; Dawyndt, Peter; DeSantis, Todd; Fierer, Noah; Fuhrman, Jed A.; Gallery, Rachel E.; Gevers, Dirk; Gibbs, Richard A.; Gil, Inigo San; Gonzalez, Antonio; Gordon, Jeffrey I.; Guralnick, Robert; Hankeln, Wolfgang; Highlander, Sarah; Hugenholtz, Philip; Jansson, Janet; Kau, Andrew L.; Kelley, Scott T.; Kennedy, Jerry; Knights, Dan; Koren, Omry; Kuczynski, Justin; Kyrpides, Nikos; Larsen, Robert; Lauber, Christian L.; Legg, Teresa; Ley, Ruth E.; Lozupone, Catherine A.; Ludwig, Wolfgang; Lyons, Donna; Maguire, Eamonn; Methé, Barbara A.; Meyer, Folker; Muegge, Brian; Nakielny, Sara; Nelson, Karen E.; Nemergut, Diana; Neufeld, Josh D.; Newbold, Lindsay K. ORCID: https://orcid.org/0000-0001-8895-1406; Oliver, Anna E.; Pace, Norman R.; Palanisamy, Giriprakash; Peplies, Jörg; Petrosino, Joseph; Proctor, Lita; Pruesse, Elmar; Quast, Christian; Raes, Jeroen; Ratnasingham, Sujeevan; Ravel, Jacques; Relman, David A.; Assunta-Sansone, Susanna; Schloss, Patrick D.; Schriml, Lynn; Sinha, Rohini; Smith, Michelle I.; Sodergren, Erica; Spor, Aymé; Stombaugh, Jesse; Tiedje, James M.; Ward, Doyle V.; Weinstock, George M.; Wendel, Doug; White, Owen; Whiteley, Andrew; Wilke, Andreas; Wortman, Jennifer R.; Yatsunenko, Tanya; Glöckner, Frank Oliver. 2011 Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29 (5). 415-420. 10.1038/nbt.1823

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Thomson, Bruce C.; James, Phillip; Bell, Thomas; Bailey, Mark; Whiteley, Andrew S.. 2011 The bacterial biogeography of British soils. Environmental Microbiology, 13 (6). 1642-1654. 10.1111/j.1462-2920.2011.02480.x

Thomson, Bruce C.; Ostle, Nick; McNamara, Niall ORCID: https://orcid.org/0000-0002-5143-5819; Bailey, Mark J.; Whiteley, Andrew S.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547. 2010 Vegetation Affects the Relative Abundances of Dominant Soil Bacterial Taxa and Soil Respiration Rates in an Upland Grassland Soil. Microbial Ecology, 59 (2). 335-343. 10.1007/s00248-009-9575-z

Kowalchuk, George A.; Yergeau, Etienne; Leveau, Johan H.J.; Sessitsch, Angela; Bailey, Mark. 2010 Plant-associated Microbial Communities. In: Lui, Wen-Tso; Jansson, Janet K., (eds.) Environmental Molecular Microbiology. New York, Caister Academic Press, 26pp.

Sutherland, William J.; Albon, Steven D; Allison, Hilary; Armstrong-Brown, Sue; Bailey, Mark J.; Brereton, Tom; Boyd, Ian L.; Carey, Peter; Edwards, Joan; Gill, Maggie; Hill, David; Hodge, Ian; Hunt, Alexander J.; Le Quesne, Will J.F.; Macdonald, David W.; Mee, Laurence D.; Mitchell, Roger; Norman, Tim; Owen, Roger P.; Parker, David; Prior, Stephanie V.; Pullin, Andrew S.; Rands, Michael R.W.; Redpath, Steve; Spencer, Jonathan; Spray, Chris J.; Thomas, Chris D.; Tucker, Graham M.; Watkinson, Andrew R.; Clements, Andy. 2010 The identification of priority policy options for UK nature conservation. Journal of Ecology, 47 (5). 955-965. 10.1111/j.1365-2664.2010.01863.x

Vogel, Timothy M.; Hirsch, Penny R.; Simonet, Pascal; Jansson, Janet K.; Tiedje, James M.; van Elsas, Jan Dirk; Nalin, Renaud; Philippot, Laurent; Bailey, Mark. 2009 Advantages of the metagenomic approach for soil exploration: reply from Vogel et al. Nature Reviews Microbiology, 7 (10). 756-757. 10.1038/nrmicro2119-c3

Vogel, Timothy M.; Simonet, Pascal; Jansson, Janet K.; Hirsch, Penny R.; Tiedje, James M.; van Elsas, Jan Dirk; Bailey, Mark J.; Nalin, Renaud; Philippot, Laurent. 2009 TerraGenome: a consortium for the sequencing of a soil metagenome. Nature Reviews Microbiology, 7 (4). 252. 10.1038/nrmicro2119

Huang, Wei E.; Ferguson, Andrew; Singer, Andrew C. ORCID: https://orcid.org/0000-0003-4705-6063; Lawson, Kathryn; Thompson, Ian P.; Kalin, Robert M.; Larkin, Michael J.; Bailey, Mark J.; Whiteley, Andrew S.. 2009 Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization. Applied and Environmental Microbiology, 75 (1). 234-241. 10.1128/AEM.01861-08

Day, John C. ORCID: https://orcid.org/0000-0002-5483-4487; Goodall, Tim I.; Bailey, Mark J.. 2009 The evolution of the adenylate-forming protein family in beetles: Multiple luciferase gene paralogues in fireflies and glow-worms. Molecular Phylogenetics and Evolution, 50 (1). 93-101. 10.1016/j.ympev.2008.09.026

Thomson, Bruce; James, Phillip; Whiteley, Andrew; Bailey, Mark; Griffiths, Robert Iwan ORCID: https://orcid.org/0000-0002-3341-4547. 2009 UK Soil Bacterial Biodiversity. [Poster] In: 10th International Symposium on Bacterial Genetics and Ecology (BAGECO 10), Uppsala, Sweden, 15-19 June 2009.

Thomson, Bruce; James, Phillip; Whiteley, Andrew; Bailey, Mark; Griffiths, Robert Iwan ORCID: https://orcid.org/0000-0002-3341-4547. 2009 UK Soil Bacterial Diversity: A Nationwide Study Examining the Environmental Factors which Determine Bacterial Community Composition. [Other] In: UK Molecular Microbial Ecology Group (MMEG) Meeting, University of Aberdeen, 30 July 2009. (Unpublished)

Slater, Frances R.; Bailey, Mark J.; Tett, Adrian J.; Turner, Sarah L.. 2008 Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiology Ecology, 66 (1). 3-13. 10.1111/j.1574-6941.2008.00505.x

Sutherland, William J.; Bailey, Mark J.; Bainbridge, Ian P.; Brereton, Tom; Dick, Jaimie T. A.; Drewitt, Joanna; Dulvy, Nicholas K.; Dusic, Nicholas R.; Freckleton, Robert P.; Gaston, Kevin J.; Gilder, Pam M.; Green, Rhys E.; Heathwaite, A. Louise; Johnson, Sally M.; Macdonald, David W.; Mitchell, Roger; Osborn, Daniel; Owen, Roger P.; Pretty, Jules; Prior, Stephanie V.; Prosser, Havard; Pullin, Andrew S.; Rose, Paul; Stott, Andrew; Tew, Tom; Thomas, Chris D.; Thompson, Des B. A.; Vickery, Juliet A.; Walker, Matt; Walmsley, Clive; Warrington, Stuart; Watkinson, Andrew R.; Williams, Rich J.; Woodroffe, Rosie; Woodroof, Harry J.. 2008 Future novel threats and opportunities facing UK biodiversity identified by horizon scanning. Journal of Applied Ecology, 45 (3). 821-833. 10.1111/j.1365-2664.2008.01474.x

Houlden, Ashley; Timms-Wilson, Tracey M.; Day, Martin J.; Bailey, Mark J.. 2008 Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops. FEMS Mircobiology Ecology, 65. 193-201. 10.1111/j.1574-6941.2008.00535.x

Kowalchuk, George A.; Heidelberg, John F.; Bailey, Mark J.. 2007 The ISME Journal: Multidisciplinary Journal of Microbial Ecology. ISME Journal, 1 (1). 1-3. 10.1038/ismej.2007.13

Li, H.; Thompson, I.; Carter, P.; Whiteley, A.; Bailey, M.; Leifert, C.; Killham, K.. 2007 Salivary nitrate – An ecological factor in reducing oral acidity. Oral Microbiology and Immunology, 22 (1). 67-71. 10.1111/j.1399-302X.2007.00313.x

Tett, Adrian; Spiers, Andrew J.; Crossman, Lisa C.; Ager, Duane; Ciric, Lena; Dow, J. Maxwell; Fry, John C.; Harris, David; Lilley, Andrew; Oliver, Anna; Parkhill, Julian; Quail, Michael A.; Rainey, Paul B.; Saunders, Nigel J.; Seeger, Kathy; Snyder, Lori A. S.; Squares, Rob; Thomas, Christoper M.; Turner, Sarah L.; Zhang, Xue-Xian; Field, Dawn; Bailey, Mark J.. 2007 Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. ISME Journal, 1 (4). 331-340. 10.1038/ismej.2007.47

Huang, Wei E.; Bailey, Mark J.; Thompson, Ian P.; Whiteley, Andrew S.; Spiers, Andrew J.. 2007 Single-Cell Raman Spectral Profiles of Pseudomonas fluorescens SBW25 Reflects in vitro and in planta Metabolic History. Microbial Ecology, 53 (3). 414-425. 10.1007/s00248-006-9138-5

Spiers, Andrew J.; Tett, Adrian; Field, Dawn; Bailey, Mark J.. 2007 The complete genome of the environmental plasmid pQBR103, its role in bacterial adaptation and the pan-microbial sugar beet phytosphere community genome [abstract]. Plasmid, 57. 242. 10.1016/j.plasmid.2006.12.001

Ude, Susanne; Bailey, Mark J.; Huang, Wei E.; Spiers, Andrew J.. 2007 The environmental plasmid pQBR103 alters the single-cell Raman spectral profile of Pseudomonas fluorescens SBW25. Microbial Ecology, 53 (3). 494-497. 10.1007/s00248-006-9191-0

McNamara, Niall P. ORCID: https://orcid.org/0000-0002-5143-5819; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Tabouret, A.; Beresford, Nicholas A.; Bailey, Mark J.; Whiteley, Andrew S.. 2007 The sensitivity of a forest soil microbial community to acute gamma-irradiation. Applied Soil Ecology, 37. 1-9. 10.1016/j.apsoil.2007.03.011

Fowler, D.; Cape, J. N.; Muller, J.; Coyle, M.; Sutton, M. A. ORCID: https://orcid.org/0000-0002-6263-6341; Smith, R.; Jeffree, C.. 2006 Atmospheric composition and the phylloshpere: the role of foliar surfaces in regulating biogeochemical cycles. In: Bailey, M. J. et al, (ed.) Microbial ecology of aerial plant surfaces. Wallingford, CABI, 305-315.

Van Der Gast, Christopher J.; Jefferson, Bruce; Reid, Elizabeth; Robinson, Tim; Bailey, Mark J.; Judd, Simon J.; Thompson, Ian P.. 2006 Bacterial diversity is determined by volume in membrane bioreactors. Environmental Microbiology, 8. 1048-1055. 10.1111/j.1462-2920.2006.00996.x

Timms-Wilson, T. M.; Griffiths, R. I. ORCID: https://orcid.org/0000-0002-3341-4547; Whiteley, A. S.; Bailey, M. J.. 2006 Detection of active bacterial populations in soil. In: van Elsas, J. D.; Jansson, J. K.; Trevor, J. T., (eds.) Modern Soil Microbiology, 2nd edition. New York, Marcel Dekker.

Kowalchuk, G.; Nelson, K.; Bailey, M.. 2006 Introducing the ‘New’ Microbial Ecology. Microbial Ecology, 51. 1-3. 10.1007/s00248-006-9008-1

Lilley, Andrew K.; Bailey, Mark J.; Cartwright, C.; Turner, Sarah L.; Hirsch, P. R.. 2006 Life in earth: the impact of GM plants on soil ecology? Trends in Biotechnology, 24. 9-14. 10.1016/j.tibtech.2005.11.005

Timms-Wilson, T. M.; Smalla, K.; Goodall, T.; Houlden, A.; Gallego, V.; Bailey, M. J.. 2006 Microbial diversity in the phyllosphere and rhizosphere of field grown crop plants - microbial specialisation at the plant surface. In: Bailey, M. et al, (ed.) Microbial ecology of aerial plant surfaces. CAB International.

Bailey, M. J; Lilley, A. K.; Timms-Wilson, T. M.; Spencer-Phillips, P. T. N., eds. 2006 Microbial ecology of aerial plant surfaces. Wallingford, CAB International, 368pp.

Manefield, M.; Griffiths, R. I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, M. J.; Whiteley, A. S.. 2006 Stable isotope probing: A critique of its role in linking phylogeny and function. In: Nannipieri, P.; Smalla, K., (eds.) Nucleic acids and proteins in soils. Springer, 205-216. (Soil Biology, 8).

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, Mark J.; McNamara, Niall P. ORCID: https://orcid.org/0000-0002-5143-5819; Whiteley, Andrew S.. 2006 The functions and components of the Sourhope soil microbiota. Applied Soil Ecology, 33 (2). 114-126. 10.1016/j.apsoil.2006.03.007

Zhang, Xue-Xian; George, Andrew; Bailey, Mark J.; Rainey, Paul B.. 2006 The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings. Microbiology, 152. 1867-1875. 10.1099/mic.0.28731-0

Timms-Wilson, T. M.; Moon, C.; Arnold, D.; Spiers, A. J.. 2006 A survey of biofilm formation and cellulose expression amongst soil and plant-associated pseudomonads. In: Bailey, M. et al, (ed.) Microbial ecology of aerial plant surfaces. CAB International.

Huang, Wei E.; Goodacre, Royston; Elliott, Geoff N.; Beckmann, Manfred; Worgan, Hilary; Bailey, Mark J.; Williams, Peter A.; Scullion, John; Draper, John. 2005 The use of chemical profiling for monitoring metabolic changes in artificial soil slurries caused by horizontal gene transfer. Metabolomics, 1. 305-315. 10.1007/s11306-005-0011-1

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Manefield, Mike; Ostle, Nick; McNamara, Niall ORCID: https://orcid.org/0000-0002-5143-5819; O'Donnell, Anthony G.; Bailey, Mark J.; Whiteley, Andrew S.. 2004 (CO2)-C-13 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere. Journal of Microbiological Methods, 58 (1). 119-129. 10.1016/j.mimet.2004.03.011

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Manefield, Mike; Whiteley, Andrew S.; Bailey, Mark J.. 2004 DNA and RNA extraction from soil. In: Kowalchuk, G.A.; Brujn, F.J. de; Head, I.M.; Akkermans, A.D.; van Elsas, J.D., (eds.) Molecular Microbial Ecology Manual [2nd edition]. Kluwer Academic, 149-158.

Huang, Wei E.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Thompson, Ian P.; Bailey, Mark J.; Whiteley, Andrew S.. 2004 Raman microscopic analysis of single microbial cells. Analytical Chemistry, 76 (15). 4452-4458. 10.1021/ac049753k

Whiteley, Andrew S.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, Mark J.. 2003 Analysis of the microbial functional diversity within water-stressed soil communities by flow cytometric analysis and CTC+ cell sorting. Journal of Microbiological Methods, 54 (2). 257-267. 10.1016/S0167-7012(03)00066-6

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Whiteley, Andrew S.; O'Donnell, Anthony G.; Bailey, Mark J.. 2003 Influence of depth and sampling time on bacterial community structure in an upland grassland soil. FEMS Microbiology Ecology, 43 (1). 35-43. 10.1111/j.1574-6941.2003.tb01043.x

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Whiteley, Andrew S.; O'Donnell, Anthony G.; Bailey, Mark J.. 2003 Physiological and community responses of established grassland bacterial populations to water stress. Applied and Environmental Microbiology, 69 (12). 6961-6968. 10.1128/AEM.69.12.6961-6968.2003

Thompson, Ian; Singer, Andrew ORCID: https://orcid.org/0000-0003-4705-6063; Whiteley, Andrew; Lilley, Andrew; Bailey, Mark; Paremain, Emily; Harper, Fran; Johnson, Andrew ORCID: https://orcid.org/0000-0003-1570-3764; Llewellyn, Neville; Pickup, Roger; Mallinson, Helen. 2002 Investigating the intrinsic ability of microbial communities to degrade organic pollutants in groundwaters. Final Report. NERC CEH. (CEH Integrating Fund) (Unpublished)

Manefield, Mike; Whiteley, Andrew S.; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Bailey, Mark J.. 2002 RNA stable isotope probing, a novel means of linking microbial community function to Phylogeny. Applied and Environmental Microbiology, 68 (11). 5367-5373. 10.1128/AEM.68.11.5367-5373.2002

Thompson, Ian; Bailey, Mark; Harper, Fran; Johnson, Andrew ORCID: https://orcid.org/0000-0003-1570-3764; Pickup, Roger; Mallinson, Helen. 2000 Investigating the intrinsic ability of microbial communities to degrade organic pollutants in groundwaters. Progresds report for October 1999 - September 2000. NERC/Centre for Ecology & Hydrology. (CEH Integrating Fund) (Unpublished)

Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Whiteley, Andrew S.; O'Donnell, Anthony G.; Bailey, Mark J.. 2000 Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Applied and Environmental Microbiology, 66 (12). 5488-5491.

Bailey, Mark J.; Thompson, Ian P.; Ellis, Richard; Meharg, Andrew A.; Wyatt, Claire; Boyd, Elain M.; Wilson, Sue; Maguire, Nicola. 1998 Molecular genetics and process level events in the biodegradation of xenobiotics in rhizosphere soils. CEH Integrating Fund Final Report 1995-1998. NERC/Centre for Ecology & Hydrology, 71pp. (Unpublished)

Bailey, Mark J.; Lilley, Andrew K.; Ellis, Richard J.; Bramwell, Penny A.; Thompson, Ian P.. 1997 Microbial ecology, inoculant distribution, and gene flux within populations of bacteria colonizing the surface of plants: case study of a GMM field release in the United Kingdom. In: Elas, J.D. van; Trevors, J.T.; Wellington, E.M.H., (eds.) Modern soil microbiology. New York, Marcel Dekker Inc., 479-500.

Bailey, Mark J.; Thompson, Ian P.; Ellis, Richard; Wyatt, Claire; Maguire, Nicola; Meharg, Andrew A.. 1996 Molecular genetics and process level events in the biodegradation of xenobiotics in rhizosphere soils. CEH Integrating Fund progress report for 1995/1996. NERC/Institute of Virology and Environmental Microbiology, 38pp. (TFS Project T10054l2) (Unpublished)