Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014–2015

Atkinson, Kate V.; Bishop, Lisa A.; Rhodes, Glenn ORCID: https://orcid.org/0000-0003-0488-3843; Salez, Nicolas; McEwan, Neil R.; Hegarty, Matthew J.; Robey, Julie; Harding, Nicola; Wetherell, Simon; Lauder, Robert M.; Pickup, Roger W.; Wilkinson, Mark; Gatherer, Derek. 2017 Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014–2015. Scientific Data, 4, 170161. 7, pp. 10.1038/sdata.2017.161

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Official URL: https://doi.org/10.1038/sdata.2017.161

Abstract/Summary

Nasopharyngeal swabs were taken from volunteers attending a general medical practice and a general hospital in Lancaster, UK, and at Lancaster University, in the winter of 2014–2015. 51 swabs were selected based on high RNA yield and allocated to deep sequencing pools as follows: patients with chronic obstructive pulmonary disease; asthmatics; adults with no respiratory symptoms; adults with feverish respiratory symptoms; adults with respiratory symptoms and presence of antibodies against influenza C; paediatric patients with respiratory symptoms (2 pools); adults with influenza C infection (2 pools), giving a total of 9 pools. Illumina sequencing was performed, with data yields per pool in the range of 345.6 megabases to 14 gigabases after removal of reads aligning to the human genome. The data were deposited in the Sequence Read Archive at NCBI, and constitute a resource for study of the viral, bacterial and fungal metagenome of the human nasopharynx in healthy and diseased states and comparison with other metagenomic studies on the human respiratory tract.

Item Type:	Publication - Article
Digital Object Identifier (DOI):	10.1038/sdata.2017.161
UKCEH and CEH Sections/Science Areas:	Parr
ISSN:	2052-4463
Additional Information. Not used in RCUK Gateway to Research.:	Open Access paper - full text available via Official URL link.
Additional Keywords:	clinical microbiology, infectious diseases, metagenomics, RNA sequencing, virology
NORA Subject Terms:	Health Medicine Biology and Microbiology
Date made live:	30 Oct 2017 11:25 +0 (UTC)
URI:	https://nora.nerc.ac.uk/id/eprint/518156

Item Type:

Publication - Article

Digital Object Identifier (DOI):

10.1038/sdata.2017.161

UKCEH and CEH Sections/Science Areas:

Parr

ISSN:

2052-4463

Additional Information. Not used in RCUK Gateway to Research.:

Open Access paper - full text available via Official URL link.

Additional Keywords:

clinical microbiology, infectious diseases, metagenomics, RNA sequencing, virology