Items where NERC Author is "Booth, Timothy"

2016

Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C.E.; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren. 2016 Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, 44 (D1). D38-D47. https://doi.org/10.1093/nar/gkv1116

2015

Gweon, Hyun S. ORCID: https://orcid.org/0000-0002-6218-6301; Oliver, Anna; Taylor, Joanne; Booth, Tim; Gibbs, Melanie ORCID: https://orcid.org/0000-0002-4091-9789; Read, Daniel S. ORCID: https://orcid.org/0000-0001-8546-5154; Griffiths, Robert I. ORCID: https://orcid.org/0000-0002-3341-4547; Schonrogge, Karsten ORCID: https://orcid.org/0000-0003-0122-6493. 2015 PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform. Methods in Ecology and Evolution, 6 (8). 973-980. https://doi.org/10.1111/2041-210X.12399

2014

Möller, Steffen; Afgan, Enis; Banck, Michael; Bonnal, Raoul J.P.; Booth, Timothy; Chilton, John; Cock, Peter J.A.; Gumbel, Markus; Harris, Nomi; Holland, Richard; Kalaš, Matúš; Kaján, László; Kibukawa, Eri; Powel, David R.; Prins, Pjotr; Quinn, Jacqueline; Sallou, Olivier; Strozzi, Francesco; Seemann, Torsten; Sloggett, Clare; Soiland-Reyes, Stian; Spooner, William; Steinbiss, Sascha; Tille, Andreas; Travis, Anthony J.; Guimera, Roman Valls; Katayama, Toshiaki; Chapman, Brad A.. 2014 Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics, 15 (suppl. 14), S7. https://doi.org/10.1186/1471-2105-15-S14-S7

2013

van Aerle, Ronny; Lange, Anke; Moorhouse, Alex; Paszkiewicz, Konrad; Ball, Katie; Johnston, Blair D.; de-Bastos, Eliane; Booth, Timothy; Tyler, Charles R.; Santos, Eduarda M.. 2013 Molecular mechanisms of toxicity of silver nanoparticles in zebrafish embryos. Environmental Science & Technology, 47 (14). 8005-8014. https://doi.org/10.1021/es401758d

2012

Sansone, Susanna-Assunta; Rocca-Serra, Philippe; Field, Dawn; Maguire, Eamonn; Taylor, Chris; Hofmann, Oliver; Fang, Hong; Neumann, Steffen; Tong, Weida; Amaral-Zettler, Linda; Begley, Kimberly; Booth, Tim; Bougueleret, Lydie; Burns, Gully; Chapman, Brad; Clark, Tim; Coleman, Lee-Ann; Copeland, Jay; Das, Sudeshna; de Daruvar, Antoine; de Matos, Paula; Dix, Ian; Edmunds, Scott; Evelo, Chris T.; Forster, Mark J.; Gaudet, Pascale; Gilbert, Jack; Goble, Carole; Griffin, Julian L.; Jacob, Daniel; Kleinjans, Jos; Harland, Lee; Haug, Kenneth; Hermjakob, Henning; Sui, Shannan J. Ho; Laederach, Alain; Liang, Shaoguang; Marshall, Stephen; McGrath, Annette; Merrill, Emily; Reilly, Dorothy; Roux, Magali; Shamu, Caroline E.; Shang, Catherine A.; Steinbeck, Christoph; Trefethen, Anne; Williams-Jones, Bryn; Wolstencroft, Katherine; Xenarios, Ioannis; Hide, Winston. 2012 Toward interoperable bioscience data. Nature Genetics, 44 (2). 121-126. https://doi.org/10.1038/ng.1054

Newbold, Lindsay K. ORCID: https://orcid.org/0000-0001-8895-1406; Oliver, Anna E.; Booth, Tim; Tiwari, Bela; DeSantis, Todd; Maguire, Michael; Andersen, Gary; van der Gast, Christopher J.; Whiteley, Andrew S.. 2012 The response of marine picoplankton to ocean acidification. Environmental Microbiology, 14 (9). 2293-2307. https://doi.org/10.1111/j.1462-2920.2012.02762.x

2011

Booth, Timothy; Bicak, Mesude; Pass, Daniel; Kille, Peter; Field, Dawn. 2011 Expanding Bio-Linux to create a platform for analysis of community diversity and function. [Poster] In: 12th Annual Bioinformatics Open Source Conference BOSC 2011, Vienna, 15-16 July 2011. (Unpublished)

Morrison, Norman; Hancock, David; Hirschman, Lynette; Dawyndt, Peter; Verslyppe, Bert; Kyrpides, Nikos; Kottmann, Renzo; Yilmaz, Pelin; Glöckner, Frank Oliver; Grethe, Jeff; Booth, Tim; Sterk, Peter; Nenadic, Goran; Field, Dawn. 2011 Data shopping in an open marketplace: introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. Standards in Genomic Sciences, 4 (2). 286-292. https://doi.org/10.4056/sigs.1344279

Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn; Knight, Rob; Cole, James R.; Amaral-Zettler, Linda; Gilbert, Jack A.; Karsch-Mizrachi, Ilene; Johnston, Anjanette; Cochrane, Guy; Vaughan, Robert; Hunter, Christopher; Park, Joonhong; Morrison, Norman; Rocca-Serra, Philippe; Sterk, Peter; Arumugam, Manimozhiyan; Bailey, Mark; Baumgartner, Laura; Birren, Bruce W.; Blaser, Martin J.; Bonazzi, Vivien Bonazzi; Booth, Tim; Bork, Peer; Bushman, Frederic D.; Buttigieg, Pier Luigi; Chain, Patrick S.G.; Charlson, Emily; Costello, Elizabeth K.; Huot-Creasy, Heather; Dawyndt, Peter; DeSantis, Todd; Fierer, Noah; Fuhrman, Jed A.; Gallery, Rachel E.; Gevers, Dirk; Gibbs, Richard A.; Gil, Inigo San; Gonzalez, Antonio; Gordon, Jeffrey I.; Guralnick, Robert; Hankeln, Wolfgang; Highlander, Sarah; Hugenholtz, Philip; Jansson, Janet; Kau, Andrew L.; Kelley, Scott T.; Kennedy, Jerry; Knights, Dan; Koren, Omry; Kuczynski, Justin; Kyrpides, Nikos; Larsen, Robert; Lauber, Christian L.; Legg, Teresa; Ley, Ruth E.; Lozupone, Catherine A.; Ludwig, Wolfgang; Lyons, Donna; Maguire, Eamonn; Methé, Barbara A.; Meyer, Folker; Muegge, Brian; Nakielny, Sara; Nelson, Karen E.; Nemergut, Diana; Neufeld, Josh D.; Newbold, Lindsay K. ORCID: https://orcid.org/0000-0001-8895-1406; Oliver, Anna E.; Pace, Norman R.; Palanisamy, Giriprakash; Peplies, Jörg; Petrosino, Joseph; Proctor, Lita; Pruesse, Elmar; Quast, Christian; Raes, Jeroen; Ratnasingham, Sujeevan; Ravel, Jacques; Relman, David A.; Assunta-Sansone, Susanna; Schloss, Patrick D.; Schriml, Lynn; Sinha, Rohini; Smith, Michelle I.; Sodergren, Erica; Spor, Aymé; Stombaugh, Jesse; Tiedje, James M.; Ward, Doyle V.; Weinstock, George M.; Wendel, Doug; White, Owen; Whiteley, Andrew; Wilke, Andreas; Wortman, Jennifer R.; Yatsunenko, Tanya; Glöckner, Frank Oliver. 2011 Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29 (5). 415-420. https://doi.org/10.1038/nbt.1823

2009

Gilbert, Jack A.; Thomas, Simon; Cooley, Natalie A.; Kulakova, Anna; Field, Dawn; Booth, Tim; McGrath, John W.; Quinn, John P.; Joint, Ian. 2009 Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters. Environmental Microbiology, 11 (1). 111-125. https://doi.org/10.1111/j.1462-2920.2008.01745.x

Field, Dawn; Sansone, Susanna-Assunta; Collis, Amanda; Booth, Tim; Dukes, Peter; Gregurick, Susan K.; Kennedy, Karen; Kolar, Patrik; Kolker, Eugene; Maxon, Mary; Millard, Sian; Mugabushaka, Alexis-Michel; Perrin, Nicola; Remacle, Jacques E.; Remington, Karin; Rocca-Serra, Philippe; Taylor, Chris F.; Thorley, Mark; Tiwari, Bela; Wilbanks, John. 2009 'Omics data sharing. Science, 326 (5950). 234-236. https://doi.org/10.1126/science.1180598

2008

Taylor, Christopher; Field, Dawn; Sansone, Susanna-Assunta; Aerts, Jan; Apweiler, Rolf; Ashburner, Michael; Bal, Catherine A.; Binz, Pierre-Alain; Bogue, Molly; Booth, Tim; Brazma, Alvis; Brinkman, Ryan R.; Clark, Adam Michael; Deutsch, Eric W.; Fiehn, Oliver; Fostel, Jennifer; Ghazal, Peter; Gibson, Frank; Gray, Tanya; Grimes, Graeme; Hancock, John M.; Hardy, Nigel W.; Hermjakob, Henning; Julian, Randall K.; Kane, Matthew; Kettner, Carsten; Kinsinger, Christopher; Kolker, Eugene; Kuiper, Martin; Le Novere, Nicholas; Leebens-mack, Jim; Lewis, Suzanna E.; Lord, Phillip; Mallon, Anne-Marie; Marthandan, Nishanth; Masuya, Hiroshi; McNally, Ruth; Mehrle, Alexander; Morrison, Norman; Orchard, Sandra; Quackenbush, John; Reecy, James M.; Robertson, Donald G.; Rocca-Serra, Phillippe; Rodriguez, Henry; Rosenfelder, Heiko; Santoyo-lopez, Janvier; Scheuermann, Richard H.; Schober, Daniel; Smith, Barry; Snape, Jason; Stoeckert, Christian J.; Tipton, Keith; Sterk, Peter; Untergasser, Andreas; Vandesompele, Jo; Wiemann, Stefan. 2008 Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nature Biotechnology, 26 (8). 889-896. https://doi.org/10.1038/nbt.1411

Jameson, Daniel; Garwood, Kevin; Garwood, Chris; Booth, Tim; Alper, Pinar; Oliver, Steven G.; Paton, Norman W.. 2008 Data capture in bioinformatics: requirements and experiences with Pedro. BMC Bioinformatics, 2008 (9), 183. https://doi.org/10.1186/1471-2105-9-183

2007

Booth, Timothy; Gilbert, Jack; Neufeld, Josh D.; Ball, Jon; Thurston, Milo; Chipman, Kevin; Joint, Ian; Field, Dawn. 2007 Handlebar: a flexible, web-based inventory manager for handling barcoded samples. Biotechniques, 42 (3). 300-302.

2006

Field, Dawn; Tiwari, Bela; Booth, Tim; Houten, Stewart; Swan, Dan; Bertrand, Nicolas; Thurston, Milo. 2006 Open software for biologists: from famine to feast. Nature Biotechnology, 24. 801-803. https://doi.org/10.1038/nbt0706-801