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A practical guide to species trend detection with unstructured data using local frequency scaling (Frescalo)

Goury, Romain ORCID: https://orcid.org/0009-0001-4051-9937; Bowler, Diana E. ORCID: https://orcid.org/0000-0002-7775-1668; Harrower, Colin ORCID: https://orcid.org/0000-0001-5070-5293; Münkemüller, Tamara; Vallet, Jeanne; Yearsley, Jon M.; Thuiller, Wilfried ORCID: https://orcid.org/0000-0002-5388-5274; Pescott, Oliver L. ORCID: https://orcid.org/0000-0002-0685-8046. 2026 A practical guide to species trend detection with unstructured data using local frequency scaling (Frescalo). Ecography, e08270. 14, pp. 10.1002/ecog.08270

Abstract

Accurately measuring biodiversity change remains a central challenge in ecology. Beyond the general idea of quantifying temporal species frequency changes, several sampling‐related biases in data collection remain key methodological challenges to consider. Long‐term standardized ecological data are rare, and most available datasets exhibit considerable spatial and temporal variation in sampling effort (i.e. unstructured data). Among the available methods, the local frequency scaling approach (Frescalo) has proven particularly effective at addressing these biases. By applying successive spatial and temporal corrections, Frescalo leverages emergent patterns in species assemblages to correct for variation in survey effort. Compared to other similar approaches, Frescalo is particularly well suited to long‐term datasets and those with a high number of species. It is also a versatile method, allowing simultaneous estimation of temporal and spatial changes, or even providing diagnostics for survey design or bias assessment. The method's technical complexity, the level of ecological knowledge required, and the challenges of implementation raise a number of practical issues in its application. In this paper, we present a clear and accessible explanation of the Frescalo methodology, offer a step‐by‐step roadmap to guide users, and highlight the wide range of applications it supports. To further facilitate its adoption, we also introduce an R package designed to simplify implementation.

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