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Identification of 72 phytoplankon species by radial basis function neural network analysis of flow cytometric data

Boddy, L.; Morris, C.W.; Wilkins, M.F.; Al-Haddad, L.; Tarran, G.A.; Jonker, R.R.; Burkill, P.H.. 2008 Identification of 72 phytoplankon species by radial basis function neural network analysis of flow cytometric data. Marine Ecology - Progress Series, 195. 47-59. 10.3354/meps195047

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Abstract/Summary

Radial basis function artificial neural networks (ANNs) were trained to discriminate between phytoplankton species based on 7 flow cytometric parameters measured on axenic cultures. Comparison was made between the performance of networks restricted to using radially-symmetric basis functions and networks using more general arbitrarily oriented ellipso~dal basis functions, with the latter proving significantly superior in performance. ANNs trained on 62, 54 and 72 taxa identified them with respectively 77, 73 and 70% overall success. As well as high success in identification, high confidence of correct identification was also achieved. Misidentifications resulted from overlap of character distributions. Improved overall identification success can be achieved by grouping together species with similar character distributions. This can be done within genera or based on groupings indicated in dendrograms constructed for the data on all species. When an ANN trained on 1 data set was tested with data on cells grown under different light conditions, overall successful identification was low (<20%), but when an ANN was trained on a combined data set identification success was high (>?0%). Clearly it is essential to include data on cells covering the whole spectrum of biological variatlon. Ways of obtaining data for training ANNs to identify phytoplankton from field samples are discussed.

Item Type: Publication - Article
Digital Object Identifier (DOI): 10.3354/meps195047
ISSN: 0171-8630
Date made live: 12 Aug 2008 +0 (UTC)
URI: http://nora.nerc.ac.uk/id/eprint/158253

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